Institute for Computational Systems Biology
Projects/Funding
German Research Foundation, Scientific Instrumentation and Information Technology
04/22, ca. 3.8M EUR, co-PI, our share: 340K EUR
Biomedical informatics high-performance computing infrastructure
Vir-AI-DIP, Seed Funding from Universität Hamburg's Ideas and Venture Fund to Dr.-Ing. Tanja Laske
05/22 - 09/23, ca. 50K EUR, host PI, our share: ca. 50K EUR
Fighting viral infections using artificial intelligence-enhanced defective interfering particles
ASPIRE, German Federal Ministry of Education and Research
01/22 - 12/24, ca. 770K EUR, co-PI, our share ca. 300K EUR
Alternative splicing driven host mechanism alteration after viral infection for drug repurposing prediction
TreuMed, German Federal Ministry of Education and Research
11/21 - 09/24, ca. 800K EUR, coordinator, our share ca. 200K EUR
Data custodianship for federated artificial intelligence in medicine
FeMAI, German Federal Ministry of Education and Research, Joint Franco-German research program
07/21 - 06/24, ca. 400K EUR, coordinator, our share ca. 200K EUR
Federated medical artificial intelligence on gut microbiomes
CLINSPECT-M, German Federal Ministry of Education and Research, Center
03/20 - 02/23, ca. 5M EUR, co-PI, our share ca. 300K EUR
Clinical Mass Spectrometry Center Munich: Progress in mass-spectrometry based proteomics has taken the technology to a level where clinical application is a logical next step. This consortium brings together an outstanding team of Munich-based experts in proteomics, medicine, and informatics to perform cutting edge research on diseases of the nervous system. The goal is to drive technological innovations, meet urgent medical needs and address important societal challenges.
DIGI TYPE, Center for Digitalization in Bavaria, Research Fellowship for Olga Lazareva
1/20 - 12/22, ca. 282K EUR, host PI, our share: ca. 282K EUR
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Sys_CARE, German Federal Ministry of Education and Research, eMed Systems Medicine initiative
10/19 - 09/22, ca. 3.4M EUR, coordinator, our share: ca. 1.4M EUR
Systems Medicine Investigation of Alternative Splicing in Cardiac and Renal Diseases
SyMBoD, German Federal Ministry of Education and Research, eMed Systems Medicine initiative
10/19 - 09/22, ca. 4.8M EUR, co-PI, our share: ca. 575K EUR
Systems Medicine Investigation of Bone Defect Treatment in Patients Comorbid with Type-2 Diabetes
SFB924, German Research Foundation, Collaborative Research Center
07/19 - 06/23, ca. 10M EUR, co-PI, our share: ca. 300K EUR
Molecular mechanisms regulating yield and yield stability in plants
German Research Foundation, Scientific Instrumentation and Information Technology
04/19, ca. 125K EUR, coordinator, our share: 125K EUR
High-performance computing infrastructure for big data in systems medicine
SFB1371, German Research Foundation, Collaborative Research Center
01/19 - 12/22, ca. 11M EUR, co-PI, our share: ca. 710K EUR
Unraveling microbiome signatures in animal and human health and disease
H2020, FeatureCloud
01/19 - 12/23, ca. 4.6M EUR, coordinator, our share: ca. 1.4M EUR
Privacy-aware artificial intelligence in biomedicine - FeatureCloud is a novel artificial intelligence platform, based on a ground-breaking new cloud infrastructure to globally integrate local AI without the need for any exchange of medical primary data – totally anonymous by default. Web: www.featurecloud.eu
LipiTUM, Bavarian Research Institute for Digital Transformation (bidt) at the Bavarian Academy of Sciences and Humanities (BAdW), Junior Research Group of Josch Konstantin Pauling
1/19 - 12/23, ca. 1.3M EUR, host PI, our share: ca. 1.3M EUR
Our aim is to bring metabolomics and lipidomics to the playbook of systems medicine workflows for the next generation of precision medicine. Web: http://www.lipitum.de/
H2020, REPO-Trial
02/18 - 01/23, ca. 5.5M EUR, co-PI, our share: ca. 742K EUR
Personalized drug repurposing. - REPO-TRIAL aims at developing an in silico approach to optimize the efficacy and precision of drug repurposing trials. Web: https://repo-trial.eu
Danish National Research Foundation, Center of Excellence
09/17 - 08/23, ca. 8.7M EUR, co-PI, our share: ca. 1.5M EUR
ATLAS – Center of Excellence for Functional Genomics and Tissue Plasticity (our participation and, thus, our share of funding stopped when Baumbach moved from SDU to TUM). Web: https://www.sdu.dk/en/atlas
ODEx(TM) lighthouse project
01/17 - 01/20, coordinator, ca. 300K EUR
Open Data Experimentarium at SDU: Development of an Open Biogas Platform based on volatile organic compound screening.
Villum Foundation Young Investigator grant
06/16 - 05/21, ca. 1M EUR
Big Data Bioinformatics - Understanding of cellular adaptation to changing conditions controlled by biochemical signalling networks using novel algorithms facing pressing big data issues. Web: https://veluxfoundations.dk/en/young-investigators-2016-0
Carlsberg Foundation
12/14, coordinator, ca. 50K EUR
Purchase of an ion mobility spectrometer (IMS) coupled to multi-capillary columns (MCC-IMS) for breath gas analysis.
Region of Southern Denmark, SDU2020
09/13 - 08/17, co-PI, ca. 500K EUR, my share ca. 200K EUR
Seed funding from the region and SDU for computational metabolic disease analysis.
Villum Foundation Blokstipendir
07/12 - 06/14, coordinator, ca. 200K EUR
Postdoc grant for integrating biomedical networks with multiple OMICS data sets.